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Probiotics

Can You Take Probiotics With Antibiotics? What the Research Actually Says

Written by: Physician's Choice Team

Reviewed by: Hayley Miller, MS, RDN, LD, Physician's Choice Science Team

Key Takeaways

  • Probiotics are generally considered safe to take alongside antibiotics, but timing matters.

  • Research has examined how probiotics may support gut microbiome balance during and after antibiotic use.

  • Many experts recommend taking probiotics and antibiotics at least two hours apart and continuing probiotics after finishing an antibiotic course.

If you've recently been prescribed antibiotics, you may wonder whether it's a good idea to take a probiotic, too. The short answer is yes. Many people choose to take probiotics alongside antibiotics to support their gut microbiome during and after treatment.

While antibiotics play an important role in targeting harmful bacteria, they can also affect the balance of microorganisms that naturally live in the digestive tract. Here's what the research says about probiotics and antibiotics, how to time them, and what to discuss with your healthcare provider.

What Happens to Your Gut During a Course of Antibiotics?

Your gut microbiome is home to trillions of microorganisms that help support digestion, immune function, and overall wellness. Antibiotics work by targeting bacteria that may be contributing to an infection. Because many antibiotics act broadly, they can also affect the balance of bacteria that naturally live in the gut.

Different antibiotics affect the microbiome differently. Some have a relatively small impact, while broad-spectrum antibiotics may influence a wider range of bacteria.

The good news is that these changes are often temporary. The gut microbiome generally recovers over time, although the timeline can vary from person to person.

What Does the Research Say About Probiotics and Antibiotics?

Many studies focus on how probiotics interact with the gut microbiome during antibiotic use and whether certain strains may support microbiome recovery after an antibiotic course is complete.

Some of the most commonly studied strains include:

  • Lactobacillus rhamnosus

  • Lactobacillus acidophilus

  • Bifidobacterium species

These strains are generally well tolerated alongside antibiotics, although results vary, depending on the strain, dosage, antibiotic type, and individual.

One challenge when evaluating probiotic research is that not all probiotics are the same. Different strains perform different functions, which means findings from one product cannot automatically be applied to another.

Timing: When Should You Take Probiotics With Antibiotics?

Timing is one of the most common questions people have when taking probiotics with antibiotics. The general guidance is to separate probiotics and antibiotics by at least two hours.

The goal is to avoid taking them simultaneously , which may reduce the likelihood that the antibiotic affects the probiotic organisms right away. For example, if you take an antibiotic at breakfast, you might choose to take your probiotic later in the morning or afternoon.

Consistency also matters. Taking your probiotic around the same time each day may help you maintain a routine throughout your antibiotic course.

Many people continue taking probiotics for the entire duration of their antibiotic prescription. Some also choose to continue supplementation after finishing antibiotics to support ongoing microbiome recovery.

What To Do After Finishing Antibiotics

The gut microbiome can take time to rebalance after an antibiotic course. For this reason, many people continue taking a probiotic supplement for a period after they finish their medication. While there is no universal timeline, ongoing probiotic use is a common approach for supporting microbiome recovery.

Diet also plays an important role. Fermented foods can help support microbial diversity as part of a balanced diet, including yogurt, kefir, sauerkraut, kimchi, and miso. Fiber-rich foods are equally important because they provide fuel for beneficial gut bacteria.

Talk to Your Healthcare Provider

Although probiotics are widely used, they aren't appropriate for everyone.

Before starting any supplement, talk with your healthcare provider or pharmacist, especially if you're taking prescription medications, managing an underlying health condition, or have questions about how a probiotic fits into your care plan.

This is particularly important for people with compromised immune systems or those taking multiple medications.

FAQs

Can You Take Probiotics at the Same Time as Antibiotics?

Most experts recommend separating probiotics and antibiotics by at least two hours rather than taking them at the same time.

How Long Should You Wait Between Taking an Antibiotic and a Probiotic?

General guidance suggests waiting at least two hours between doses. Your healthcare provider or pharmacist can offer recommendations based on the specific antibiotic you're taking.

How Long Should You Take Probiotics After Finishing Antibiotics?

Many people continue taking probiotics after completing an antibiotic course to support microbiome recovery. The ideal duration can vary depending on individual circumstances.

Which Probiotic Strains Are Most Studied Alongside Antibiotic Use?

Some of the most researched strains include Lactobacillus rhamnosus, Lactobacillus acidophilus, Bifidobacterium species, and Saccharomyces boulardii.

Can Probiotics Be Taken With All Types of Antibiotics?

Different antibiotics have different mechanisms of action. If you're unsure whether a probiotic is appropriate alongside a specific antibiotic, consult your healthcare provider or pharmacist for individualized guidance.

Conclusion

So, can you take probiotics with antibiotics? For many people, the answer is yes. Research has examined how probiotics support the gut microbiome during and after antibiotic use, and many healthcare professionals recommend separating the two by at least a couple of hours.

If you're considering a probiotic, the Physician's Choice 60 Billion Probiotic  contains 10 diverse strains, including Lactobacillus acidophilus and multiple Bifidobacterium strains, to support overall gut microbiome health. As always, discuss any new supplement with your healthcare provider before adding it to your routine.

These statements have not been evaluated by the Food and Drug Administration. This product is not intended to diagnose, treat, cure or prevent any disease.

Sources:

Antibiotics Can Temporarily Wipe Out the Gut Microbiome | UCLA Health

Impact of Antibiotics on the Human Microbiome and Consequences for Host Health | PMC

Probiotics - Health Professional Fact Sheet | PMC

Should You Take Probiotics with Antibiotics? | Harvard Health